STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2200PFAM: membrane protein of unknown function; KEGG: nmu:Nmul_A1137 membrane protein of unknown function. (133 aa)    
Predicted Functional Partners:
Slit_2201
KEGG: vap:Vapar_1697 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease.
       0.773
Slit_2202
KEGG: pau:PA14_49860 hypothetical protein.
       0.671
Slit_2199
PFAM: Radical SAM domain protein; KEGG: mpt:Mpe_A3613 radical SAM family Fe-S oxidoreductase; Belongs to the radical SAM superfamily. RlmN family.
     
 0.629
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.