Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2210KEGG: pph:Ppha_0637 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat. (736 aa)    
Predicted Functional Partners:
Slit_0611
KEGG: bph:Bphy_2998 TPR domain-containing protein.
      0.851
Slit_0576
KEGG: gsu:GSU1547 TPR domain-containing protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat.
   
0.786
Slit_2211
KEGG: mfa:Mfla_1127 hypothetical protein.
       0.651
Slit_2209
PFAM: Auxin Efflux Carrier; KEGG: cpb:Cphamn1_0469 auxin efflux carrier.
       0.584
Slit_2212
KEGG: mfa:Mfla_1126 hypothetical protein.
       0.583
Slit_1165
PFAM: Ankyrin; KEGG: pmx:PERMA_0372 ankyrin domain protein.
  
 
   0.559
Slit_2467
PFAM: glycosyl transferase group 1; KEGG: lch:Lcho_3607 glycosyl transferase group 1.
 
   
 0.485
Slit_2213
KEGG: sil:SPO3260 methyltransferase,-like protein.
       0.413
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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