STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2213KEGG: sil:SPO3260 methyltransferase,-like protein. (250 aa)    
Predicted Functional Partners:
Slit_2214
KEGG: pol:Bpro_0709 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR.
       0.661
Slit_2215
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rmr:Rmar_2228 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein.
       0.643
Slit_2212
KEGG: mfa:Mfla_1126 hypothetical protein.
       0.462
Slit_2198
KEGG: app:CAP2UW1_3892 adenylate/guanylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; Ankyrin; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; Ankyrin.
  
     0.440
Slit_2211
KEGG: mfa:Mfla_1127 hypothetical protein.
       0.419
Slit_2216
PFAM: protein of unknown function DUF535; KEGG: yen:YE1513 putative virulence factor.
       0.419
Slit_2210
KEGG: pph:Ppha_0637 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat.
       0.413
Slit_2893
PFAM: Cephalosporin hydroxylase; KEGG: syn:slr1619 hypothetical protein.
 
     0.406
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.