Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2245PFAM: cytochrome B561; KEGG: rso:RSc0199 cytochrome b561 cytochrome transmembrane protein. (171 aa)    
Predicted Functional Partners:
Slit_0172
PFAM: cytochrome B561; KEGG: pmy:Pmen_1714 cytochrome b561.
  
     0.743
Slit_2246
PFAM: Invasion gene expression up-regulator SirB; KEGG: neu:NE1499 hypothetical protein.
       0.732
Slit_2247
KEGG: mei:Msip34_2724 hypothetical protein.
       0.716
Slit_1349
YceI family protein; KEGG: dar:Daro_2795 YceI; PFAM: YceI family protein; SMART: YceI family protein; Belongs to the UPF0312 family.
 
  
 0.640
Slit_1348
KEGG: mmb:Mmol_1115 YceI family protein; PFAM: YceI family protein; SMART: YceI family protein; Belongs to the UPF0312 family.
 
  
 0.581
Slit_2244
PFAM: HI0933 family protein; KEGG: reu:Reut_A2458 hypothetical protein.
       0.566
Slit_2052
YceI family protein; KEGG: eba:ebA5028 hypothetical protein; PFAM: YceI family protein; SMART: YceI family protein; Belongs to the UPF0312 family.
 
  
 0.540
Slit_2243
KEGG: mmb:Mmol_1279 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family.
       0.407
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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