STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2287KEGG: mei:Msip34_1804 hypothetical protein. (163 aa)    
Predicted Functional Partners:
Slit_2286
KEGG: nmu:Nmul_A1143 cupin region; PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein.
       0.810
Slit_2284
KEGG: net:Neut_2023 FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase).
       0.556
Slit_2285
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: mei:Msip34_1806 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
       0.553
Slit_2283
TIGRFAM: signal peptidase I; KEGG: cvi:CV_3687 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Belongs to the peptidase S26 family.
       0.486
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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