STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2295PFAM: protein of unknown function UPF0005; KEGG: neu:NE1018 hypothetical protein; Belongs to the BI1 family. (229 aa)    
Predicted Functional Partners:
Slit_2296
PFAM: HopJ type III effector protein; KEGG: cja:CJA_1687 type III effector HopPmaJ(Pto).
       0.572
htpX
PFAM: HtpX domain protein; peptidase M48 Ste24p; KEGG: nmu:Nmul_A1034 heat shock protein HtpX; Belongs to the peptidase M48B family.
  
  
 0.444
Slit_1422
HflK protein; HflC and HflK could encode or regulate a protease.
  
   
 0.421
Slit_1977
Manually curated; PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; KEGG: mmb:Mmol_1308 lytic transglycosylase catalytic; SMART: Peptidoglycan-binding LysM.
  
     0.409
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.