Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2306KEGG: glo:Glov_2674 hypothetical protein. (324 aa)    
Predicted Functional Partners:
Slit_2304
PFAM: Hemolysin-type calcium-binding region; KEGG: rfr:Rfer_2715 VCBS.
       0.773
Slit_2305
KEGG: tgr:Tgr7_1802 protein of unknown function DUF1568.
       0.773
Slit_2307
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: gur:Gura_4141 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
       0.773
Slit_2308
Manually curated; PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: gur:Gura_1321 TPR repeat-containing protein; SMART: Tetratricopeptide repeat.
       0.773
Slit_2303
KEGG: dar:Daro_3825 hypothetical protein.
       0.693
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.