STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2308Manually curated; PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: gur:Gura_1321 TPR repeat-containing protein; SMART: Tetratricopeptide repeat. (461 aa)    
Predicted Functional Partners:
Slit_2304
PFAM: Hemolysin-type calcium-binding region; KEGG: rfr:Rfer_2715 VCBS.
  
    0.780
Slit_2305
KEGG: tgr:Tgr7_1802 protein of unknown function DUF1568.
       0.773
Slit_2306
KEGG: glo:Glov_2674 hypothetical protein.
       0.773
Slit_2307
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: gur:Gura_4141 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
       0.773
Slit_2303
KEGG: dar:Daro_3825 hypothetical protein.
       0.693
Slit_0253
Fibronectin type III domain protein; KEGG: dol:Dole_3024 TPR repeat-containing protein; PFAM: Fibronectin type III domain protein; TPR repeat-containing protein; NHL repeat containing protein; SMART: Tetratricopeptide repeat; Fibronectin type III domain protein.
 
     0.479
Slit_0506
PFAM: NHL repeat containing protein; KEGG: geo:Geob_3253 NHL repeat containing protein.
  
    0.415
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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