STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2332PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: tbd:Tbd_1204 PhnB protein. (145 aa)    
Predicted Functional Partners:
Slit_2330
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: rca:Rcas_4095 3-demethylubiquinone-9 3-methyltransferase.
 
  
 0.865
Slit_2331
PFAM: bifunctional deaminase-reductase domain protein; KEGG: dfe:Dfer_1353 bifunctional deaminase-reductase domain protein.
 
     0.775
Slit_2333
KEGG: nmu:Nmul_A1554 glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.765
Slit_2328
PFAM: bifunctional deaminase-reductase domain protein; KEGG: stp:Strop_1085 deaminase-reductase domain-containing protein.
 
     0.596
Slit_2329
PFAM: Polyketide cyclase/dehydrase; KEGG: vap:Vapar_4411 hypothetical protein.
 
     0.559
Slit_1853
PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bur:Bcep18194_A4872 glutathione-dependent formaldehyde-activating, GFA.
  
    0.554
Slit_1108
PFAM: bifunctional deaminase-reductase domain protein; KEGG: ote:Oter_2260 deaminase-reductase domain-containing protein.
 
     0.484
Slit_2326
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mes:Meso_1126 activator of HSP90 ATPase-like protein.
 
     0.457
Slit_2322
KEGG: oca:OCAR_5411 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.
 
    0.419
Slit_2327
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: oca:OCAR_5415 activator of HSP90 ATPase 1 family protein.
 
     0.418
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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