Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2339TIGRFAM: DNA-3-methyladenine glycosylase I; KEGG: amr:AM1_4494 DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase. (199 aa)    
Predicted Functional Partners:
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
      0.862
Slit_2340
Hypothetical protein.
       0.539
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.523
Slit_2337
PFAM: transposase IS3/IS911 family protein; KEGG: xcv:XCV0619 transposase.
       0.419
Slit_2338
PFAM: Integrase catalytic region; KEGG: net:Neut_2192 integrase catalytic subunit.
       0.419
Slit_0427
A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
    
 0.418
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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