Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2381TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; KEGG: dar:Daro_4009 PAS; SMART: PAC repeat-containing protein; PAS domain containing protein. (172 aa)    
Predicted Functional Partners:
Slit_1586
KEGG: dar:Daro_1143 histidine kinase, HAMP region: chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
 
   0.924
Slit_0544
KEGG: cvi:CV_2852 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
 
 
   0.918
Slit_0552
KEGG: app:CAP2UW1_2453 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer.
 
 
   0.917
Slit_2427
KEGG: dar:Daro_2933 histidine kinase, HAMP region: chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
 
 
   0.917
Slit_2469
KEGG: lhk:LHK_01618 probable methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
 
 
   0.916
Slit_1255
KEGG: cvi:CV_0257 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
 
 
   0.915
Slit_2035
KEGG: app:CAP2UW1_2066 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; type IV pilus assembly PilZ; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
 
 
   0.915
Slit_1371
KEGG: app:CAP2UW1_2453 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer.
 
 
   0.912
Slit_0545
KEGG: dar:Daro_1902 histidine kinase, HAMP region: chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
 
 
   0.911
Slit_2937
KEGG: dar:Daro_3896 chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
 
  
   0.901
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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