Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2438KEGG: pst:PSPTO_0023 hypothetical protein. (196 aa)    
Predicted Functional Partners:
Slit_2439
KEGG: lch:Lcho_4294 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
       0.789
Slit_2435
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.463
Slit_2436
PFAM: restriction modification system DNA specificity domain; KEGG: dar:Daro_1307 restriction modification system DNA specificity subunit.
       0.463
Slit_2437
PFAM: N-6 DNA methylase; KEGG: ava:Ava_3498 N-6 DNA methylase.
       0.463
Slit_2440
Hypothetical protein; KEGG: cko:CKO_02731 cytochrome o ubiquinol oxidase subunit III.
       0.412
Slit_2434
KEGG: sfr:Sfri_4016 hypothetical protein.
       0.401
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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