STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2454KEGG: nmu:Nmul_A0558 hypothetical protein. (251 aa)    
Predicted Functional Partners:
Slit_2453
PFAM: protein of unknown function DUF583; KEGG: dar:Daro_0652 hypothetical protein.
 
    0.938
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
  
    0.812
erpA
Iron-sulfur cluster assembly accessory protein; Required for insertion of 4Fe-4S clusters.
  
    0.718
rpsI
PFAM: ribosomal protein S9; KEGG: nmu:Nmul_A0560 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
       0.606
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.606
Slit_2709
PFAM: Peptidase M23; KEGG: nmu:Nmul_A2486 peptidase M23B.
  
     0.587
Slit_1463
KEGG: dar:Daro_2339 hypothetical protein.
  
     0.519
Slit_0671
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: dar:Daro_0917 ErfK/YbiS/YcfS/YnhG.
  
     0.503
Slit_2173
KEGG: psa:PST_1449 putative lipoprotein.
  
     0.473
Slit_2460
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: nth:Nther_1117 glycerophosphodiester phosphodiesterase.
 
     0.461
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.