Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2460PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: nth:Nther_1117 glycerophosphodiester phosphodiesterase. (246 aa)    
Predicted Functional Partners:
Slit_2458
PFAM: Carbohydrate kinase, FGGY-like; KEGG: fal:FRAAL4566 glycerol kinase.
 
  
 0.974
Slit_2459
PFAM: FAD dependent oxidoreductase; KEGG: saq:Sare_4611 FAD dependent oxidoreductase.
 
 
 0.961
Slit_2461
KEGG: dat:HRM2_34910 hypothetical protein.
       0.781
Slit_2462
TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; CBS domain containing protein; GGDEF domain containing protein; KEGG: mms:mma_1158 hypothetical protein; SMART: EAL domain protein.
     
 0.595
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
     
 0.539
Slit_2464
KEGG: har:HEAR2735 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase.
  
  
 0.536
Slit_2463
Hypothetical protein.
       0.535
rpsI
PFAM: ribosomal protein S9; KEGG: nmu:Nmul_A0560 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
       0.533
Slit_1493
TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: rpi:Rpic_0937 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 
 0.490
Slit_2454
KEGG: nmu:Nmul_A0558 hypothetical protein.
 
     0.460
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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