STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2478PFAM: porin Gram-negative type; KEGG: tbd:Tbd_0448 outer membrane protein (porin). (344 aa)    
Predicted Functional Partners:
Slit_2477
PFAM: porin Gram-negative type; KEGG: eba:ebA2143 putative porin precursor transmembrane protein.
 
  
 
0.790
Slit_2049
PFAM: VacJ family lipoprotein; KEGG: tgr:Tgr7_2450 surface lipoprotein-like protein.
   
 
 0.715
Slit_1664
PFAM: porin LamB type; KEGG: pna:Pnap_3690 maltoporin precursor.
     
 0.563
Slit_1459
PFAM: FIST C domain; domain of unknown function DUF1745; KEGG: dar:Daro_3873 hypothetical protein.
  
    0.444
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
    
 
 0.438
Slit_0619
PFAM: flagellar protein FlaG protein; KEGG: tbd:Tbd_1591 putative flagellar protein FlaG.
  
     0.428
Slit_0420
KEGG: dar:Daro_2990 hypothetical protein.
  
     0.417
Slit_1160
KEGG: mgm:Mmc1_3164 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein.
   
 
 0.412
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.