Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Slit_2496TIGRFAM: decaheme-associated outer membrane protein, MtrB/PioB family; KEGG: dar:Daro_1403 hypothetical protein. (810 aa)    
Predicted Functional Partners:
Slit_2497
Decaheme c-type cytochrome, DmsE family; KEGG: dar:Daro_1402 double CXXCH motif-containing protein; TIGRFAM: decaheme c-type cytochrome, DmsE family; cytochrome C family protein; PFAM: doubled CXXCH domain protein.
   
 
 0.800
Slit_2495
PFAM: NapC/NirT cytochrome c domain protein; KEGG: dar:Daro_2579 NapC/NirT cytochrome c, N-terminal.
   
 
 0.620
Slit_2498
PFAM: cytochrome c class I; KEGG: dar:Daro_1401 cytochrome c, class I.
       0.584
Slit_1642
PFAM: outer membrane chaperone Skp (OmpH); KEGG: tbd:Tbd_0794 putative outer membrane protein; Belongs to the skp family.
    
 
 0.424
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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