STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2498PFAM: cytochrome c class I; KEGG: dar:Daro_1401 cytochrome c, class I. (117 aa)    
Predicted Functional Partners:
Slit_1353
KEGG: mei:Msip34_0374 cytochrome c class I; manually curated; PFAM: cytochrome c class I.
  
     0.769
Slit_2042
KEGG: mei:Msip34_0374 cytochrome c class I.
  
     0.769
Slit_2780
KEGG: mmb:Mmol_0398 cytochrome c class I.
  
     0.766
Slit_0019
PFAM: cytochrome c class I; KEGG: mei:Msip34_0374 cytochrome c class I.
  
     0.758
Slit_2694
PFAM: cytochrome c class I; KEGG: mei:Msip34_0374 cytochrome c class I.
  
     0.755
Slit_0510
PFAM: cytochrome c class I; KEGG: dar:Daro_3321 cytochrome c, class I.
  
     0.749
Slit_1122
Nitric-oxide reductase; KEGG: dar:Daro_3191 cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
   
  
 0.733
Slit_2497
Decaheme c-type cytochrome, DmsE family; KEGG: dar:Daro_1402 double CXXCH motif-containing protein; TIGRFAM: decaheme c-type cytochrome, DmsE family; cytochrome C family protein; PFAM: doubled CXXCH domain protein.
 
     0.675
Slit_0703
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: nmu:Nmul_A0233 Rieske (2Fe-2S) region.
  
     0.634
Slit_0643
PFAM: Polysulphide reductase NrfD; KEGG: gme:Gmet_1812 polysulphide reductase, NrfD.
     
 0.618
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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