Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
Slit_2512KEGG: sfu:Sfum_2391 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (615 aa)    
Predicted Functional Partners:
Slit_2514
PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2392 fis family transcriptional regulator.
  
 0.996
Slit_2515
PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2393 ABC-2 type transporter.
  
 0.996
Slit_2511
Efflux transporter, RND family, MFP subunit; KEGG: sfu:Sfum_2390 secretion protein HlyD family protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.962
Slit_2513
KEGG: hypothetical protein.
       0.773
Slit_0721
PFAM: ABC-2 type transporter; KEGG: cps:CPS_1067 putative ABC transporter, permease protein.
 
  
 0.743
Slit_2360
KEGG: nmu:Nmul_A0584 putative ABC-2 type transport system permease protein.
  
 
 0.589
Slit_2510
PFAM: regulatory protein TetR; KEGG: azc:AZC_4699 putative transcriptional regulator.
     
 0.556
Slit_2516
KEGG: dar:Daro_4122 putative inner membrane protein.
       0.526
Slit_0577
PFAM: ABC-2 type transporter; KEGG: cpc:Cpar_1860 ABC-2 type transporter.
 
  
 0.470
Slit_2509
KEGG: rfr:Rfer_0168 hypothetical protein.
       0.405
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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