STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2515PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2393 ABC-2 type transporter. (369 aa)    
Predicted Functional Partners:
Slit_2512
KEGG: sfu:Sfum_2391 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.996
Slit_2511
Efflux transporter, RND family, MFP subunit; KEGG: sfu:Sfum_2390 secretion protein HlyD family protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.980
Slit_0578
KEGG: ttr:Tter_2251 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.958
Slit_0722
KEGG: asa:ASA_1248 ABC-type transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.936
Slit_0437
KEGG: app:CAP2UW1_4310 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
   
  0.933
Slit_2359
KEGG: mfa:Mfla_0682 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.928
Slit_2818
ABC transporter related protein; KEGG: mms:mma_3383 ABC-2 type transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.928
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
   
  0.900
Slit_2514
PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2392 fis family transcriptional regulator.
 
  
 
0.882
Slit_2079
KEGG: nmu:Nmul_A0951 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    
 0.858
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.