Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2529PFAM: iron permease FTR1; KEGG: pna:Pnap_3854 iron permease FTR1. (277 aa)    
Predicted Functional Partners:
Slit_2530
KEGG: tcx:Tcr_2102 hypothetical protein.
 
   
 0.949
Slit_2528
KEGG: tcx:Tcr_2104 hypothetical protein.
      0.948
Slit_2527
Hypothetical protein; KEGG: dar:Daro_3555 chromate transporter.
       0.737
fur
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: mei:Msip34_1882 ferric uptake regulator, Fur family; Belongs to the Fur family.
     
 0.594
Slit_2526
PFAM: sodium/calcium exchanger membrane region; KEGG: rlt:Rleg2_2731 sodium/calcium exchanger membrane region.
     
 0.530
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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