Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2541Lysine decarboxylase; KEGG: mms:mma_1191 arginine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein. (748 aa)    
Predicted Functional Partners:
argH
KEGG: mei:Msip34_0037 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase.
     
 0.826
Slit_2540
KEGG: net:Neut_2524 RNA-binding S4 domain-containing protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein.
       0.768
Slit_2076
PFAM: Uncharacterised conserved protein UCP015557; KEGG: app:CAP2UW1_1557 hypothetical protein.
  
     0.695
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
 
   
 0.692
Slit_2539
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: tgr:Tgr7_3068 suppressor for copper-sensitivity D, putative.
       0.688
dcd
Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP.
       0.623
Slit_2542
KEGG: lhk:LHK_01827 hypothetical protein.
       0.551
Slit_2955
PFAM: Protein of unknown function DUF2288; KEGG: cja:CJA_2968 hypothetical protein.
  
     0.547
Slit_0847
PFAM: ATPase associated with various cellular activities AAA_3; KEGG: pat:Patl_1662 ATPase.
    
 
 0.544
Slit_2221
PFAM: ATPase associated with various cellular activities AAA_3; KEGG: tgr:Tgr7_1491 MoxR protein, putative.
    
 
 0.544
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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