Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2547Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: gur:Gura_1300 helix-turn-helix domain-containing protein. (132 aa)    
Predicted Functional Partners:
Slit_2548
KEGG: app:CAP2UW1_0225 hypothetical protein.
  
 
 0.974
Slit_1771
KEGG: avi:Avi_3785 stability protein StbE; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system.
   
 
 0.809
Slit_2187
KEGG: mar:MAE_01680 hypothetical protein.
  
   
 0.555
Slit_2546
KEGG: mba:Mbar_A0447 hypothetical protein.
       0.500
Slit_2794
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: rlt:Rleg2_0775 putative transcription regulator with HTH domain.
  
   
 0.489
Slit_2549
KEGG: azo:azo1111 putative hemerythrin-like protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein.
       0.438
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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