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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Slit_2563KEGG: bph:Bphy_6066 formate hydrogenlyase subunit 4. (319 aa)    
Predicted Functional Partners:
Slit_2560
PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: reh:H16_A2200 formate hydrogenlyase subunit 5.
 
 
 0.999
Slit_2559
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: pol:Bpro_0921 NADH ubiquinone oxidoreductase, 20 kDa subunit.
 
 
 0.997
Slit_2564
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: eba:ebA4193 hydrogenase 4 subunit B.
 
 
 0.989
Slit_2561
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: eba:ebA4190 hydrogenase 4 subunit F.
 
 
 0.988
Slit_2562
KEGG: pol:Bpro_0918 hydrogenase 4 membrane component.
 
  
 0.972
nuoI
NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.776
Slit_0802
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: noc:Noc_1929 4Fe-4S ferredoxin, iron-sulfur binding.
  
 
 0.616
Slit_0836
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: app:CAP2UW1_4423 4Fe-4S ferredoxin iron-sulfur binding domain protein.
  
 
 0.616
Slit_0909
KEGG: azo:azo0556 ferredoxin; TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein.
  
 
 0.616
Slit_2364
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tgr:Tgr7_0299 4Fe-4S ferredoxin iron-sulfur binding domain protein.
  
 
 0.616
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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