Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2564PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: eba:ebA4193 hydrogenase 4 subunit B. (669 aa)    
Predicted Functional Partners:
Slit_2560
PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: reh:H16_A2200 formate hydrogenlyase subunit 5.
 
 
 0.999
Slit_2563
KEGG: bph:Bphy_6066 formate hydrogenlyase subunit 4.
 
 
 0.989
Slit_2559
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: pol:Bpro_0921 NADH ubiquinone oxidoreductase, 20 kDa subunit.
 
 
 0.988
Slit_2561
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: eba:ebA4190 hydrogenase 4 subunit F.
 
  
0.985
Slit_1081
TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; KEGG: tmz:Tmz1t_1753 proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein.
 
 
0.978
Slit_2562
KEGG: pol:Bpro_0918 hydrogenase 4 membrane component.
 
  
 0.970
Slit_2556
PFAM: V-type ATPase 116 kDa subunit; KEGG: noc:Noc_2087 V-type ATPase, 116 kDa subunit; Belongs to the V-ATPase 116 kDa subunit family.
       0.473
Slit_2557
PFAM: H+transporting two-sector ATPase C (AC39) subunit; KEGG: noc:Noc_2088 H+-transporting two-sector ATPase, C (AC39) subunit.
       0.473
Slit_2558
KEGG: noc:Noc_2089 H+-ATPase, subunit H.
       0.473
Slit_2565
TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; CBS domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: azo:azo1544 GGDEF/EAL/PAC/PAS-domain-containing protein; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; CBS domain containing protein.
       0.466
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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