STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2573KEGG: mxa:MXAN_6404 hypothetical protein. (245 aa)    
Predicted Functional Partners:
Slit_2574
PFAM: protein of unknown function DUF214; KEGG: mxa:MXAN_6403 putative ABC transporter, permease protein.
 
 
 0.984
Slit_2571
KEGG: mxa:MXAN_6405 hypothetical protein.
       0.793
Slit_2572
KEGG: gur:Gura_1403 hypothetical protein.
       0.773
Slit_2570
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cyc:PCC7424_4642 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.737
Slit_2575
KEGG: mxa:MXAN_6402 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 
 0.729
lolB
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
    
 
 0.715
Slit_1459
PFAM: FIST C domain; domain of unknown function DUF1745; KEGG: dar:Daro_3873 hypothetical protein.
  
     0.654
Slit_1178
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: mfa:Mfla_1381 N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin.
    
   0.523
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
  
    0.447
Slit_1402
KEGG: mmb:Mmol_0641 lipoprotein releasing system, transmembrane protein, LolC/E family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214.
   
 
 0.424
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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