STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2599PFAM: G8 domain; KEGG: rfr:Rfer_3337 hypothetical protein. (1201 aa)    
Predicted Functional Partners:
Slit_2601
Conserved hypothetical protein; KEGG: rfr:Rfer_3339 methylation.
 
     0.948
Slit_2603
Hypothetical protein; KEGG: tbd:Tbd_0755 general secretion pathway protein H.
 
     0.948
Slit_2595
KEGG: har:HEAR1941 putative mannose-sensitive agglutinin (MSHA) biogenesis protein MshJ (pilus type IV); putative signal peptide.
 
     0.943
Slit_2597
KEGG: har:HEAR1943 putative mannose-sensitive agglutinin (MSHA) biogenesis protein MshI.
 
     0.940
Slit_2596
KEGG: har:HEAR1942 putative mannose-sensitive agglutinin (MSHA) biogenesis protein MshI (pilus type IV); putative signal peptide.
 
     0.931
Slit_2593
PFAM: type II and III secretion system protein; Secretin/TonB short domain; KEGG: har:HEAR1939 mannose-sensitive hemagglutinin L.
 
    0.917
Slit_2591
PFAM: TPR repeat-containing protein; KEGG: har:HEAR1937 putative MSHA biogenesis protein MshN.
 
     0.881
Slit_2592
KEGG: mmb:Mmol_1208 general secretion pathway protein, ATPase.
 
     0.844
Slit_2600
KEGG: har:HEAR1946 putative mannose-sensitive agglutinin (MSHA) biogenesis protein MshP; putative signal peptide.
       0.792
Slit_2602
KEGG: rfr:Rfer_3340 hypothetical protein.
       0.789
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.