Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Slit_2605KEGG: rfr:Rfer_3364 hypothetical protein. (205 aa)    
Predicted Functional Partners:
Slit_2606
KEGG: har:HEAR1951 hypothetical protein.
       0.545
Slit_2607
PFAM: Type II secretion system F domain; KEGG: har:HEAR1952 type IV pilus assembly protein TapC.
       0.539
Slit_2608
KEGG: har:HEAR1953 general secretion pathway protein E (type II traffic warden ATPase); PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
       0.539
Slit_2604
Conserved hypothetical protein; KEGG: rfr:Rfer_3363 methylation.
       0.448
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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