Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2643Polyferredoxin-like protein; KEGG: gbm:Gbem_1233 4Fe-4S ferredoxin, iron-sulfur binding protein. (438 aa)    
Predicted Functional Partners:
Slit_2644
Spermidine synthase-like protein; KEGG: bbt:BBta_1296 putative spermine/spermidine synthase family protein.
 
     0.918
Slit_2654
PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: eba:ebA2882 cytochrome oxidase, cytochrome c subunit.
 
  
 0.910
Slit_0414
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.900
Slit_0412
KEGG: tcx:Tcr_1964 cytochrome c oxidase, cbb3-type, subunit II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO.
 
  
 0.886
Slit_2655
KEGG: sth:STH3153 cytochrome c oxidase heme b and copper-binding subunit; PFAM: cytochrome c oxidase subunit I.
 
  
 0.876
Slit_0411
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; KEGG: rma:Rmag_0039 cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.845
Slit_2659
PFAM: cytochrome c oxidase subunit I; KEGG: ilo:IL1297 Cbb3-type cytochrome oxidase, subunit 1.
 
  
 0.795
Slit_2642
Hypothetical protein; KEGG: sgl:SG0955 lysine transporter.
       0.773
Slit_2647
Non-specific serine/threonine protein kinase; KEGG: tcu:Tcur_0052 protein of unknown function DUF323; PFAM: protein of unknown function DUF323.
 
     0.707
Slit_2657
PFAM: cytochrome c class I; KEGG: tbd:Tbd_0129 cytochrome c-type protein.
 
    0.685
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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