Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2644Spermidine synthase-like protein; KEGG: bbt:BBta_1296 putative spermine/spermidine synthase family protein. (879 aa)    
Predicted Functional Partners:
Slit_2643
Polyferredoxin-like protein; KEGG: gbm:Gbem_1233 4Fe-4S ferredoxin, iron-sulfur binding protein.
 
     0.918
Slit_2028
PFAM: Spermine synthase; KEGG: azo:azo2053 putative spermidine synthase.
  
  
  0.912
mtnP
Methylthioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates; Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.
  
 
 0.911
Slit_2037
PFAM: protein of unknown function DUF152; KEGG: mei:Msip34_1707 protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family.
     
  0.900
Slit_2647
Non-specific serine/threonine protein kinase; KEGG: tcu:Tcur_0052 protein of unknown function DUF323; PFAM: protein of unknown function DUF323.
 
   
 0.853
Slit_2654
PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: eba:ebA2882 cytochrome oxidase, cytochrome c subunit.
 
     0.804
Slit_0591
KEGG: dar:Daro_0766 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein.
    
   0.754
Slit_0646
Hypothetical protein; KEGG: dat:HRM2_15130 MopC.
  
     0.717
Slit_2642
Hypothetical protein; KEGG: sgl:SG0955 lysine transporter.
     
 0.687
Slit_2655
KEGG: sth:STH3153 cytochrome c oxidase heme b and copper-binding subunit; PFAM: cytochrome c oxidase subunit I.
 
     0.666
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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