Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2659PFAM: cytochrome c oxidase subunit I; KEGG: ilo:IL1297 Cbb3-type cytochrome oxidase, subunit 1. (172 aa)    
Predicted Functional Partners:
Slit_2654
PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: eba:ebA2882 cytochrome oxidase, cytochrome c subunit.
 
 
 0.951
Slit_0412
KEGG: tcx:Tcr_1964 cytochrome c oxidase, cbb3-type, subunit II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO.
 
 
 0.940
Slit_1608
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; NADH dehydrogenase (ubiquinone) 24 kDa subunit; Soluble ligand binding domain; KEGG: dar:Daro_0979 NADH dehydrogenase.
   
 
 0.891
Slit_2658
Hypothetical protein; KEGG: bba:Bd2601 nitric oxide reductase, cytochrome c-containing subunit.
  
 
 0.868
Slit_0130
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 0.853
Slit_2657
PFAM: cytochrome c class I; KEGG: tbd:Tbd_0129 cytochrome c-type protein.
 
 
 0.811
Slit_2643
Polyferredoxin-like protein; KEGG: gbm:Gbem_1233 4Fe-4S ferredoxin, iron-sulfur binding protein.
 
  
 0.795
Slit_1874
Polyferredoxin-like protein; KEGG: gem:GM21_3044 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
  
 0.794
Slit_2686
Polyferredoxin-like protein; KEGG: sus:Acid_3512 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
  
 0.790
Slit_2660
KEGG: chl:Chy400_0633 hypothetical protein.
       0.787
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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