Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2661Hypothetical protein; KEGG: AGAP003276-PA; K13169 splicing factor, arginine/serine-rich 17. (153 aa)    
Predicted Functional Partners:
Slit_2658
Hypothetical protein; KEGG: bba:Bd2601 nitric oxide reductase, cytochrome c-containing subunit.
     
 0.671
Slit_2660
KEGG: chl:Chy400_0633 hypothetical protein.
       0.671
Slit_2659
PFAM: cytochrome c oxidase subunit I; KEGG: ilo:IL1297 Cbb3-type cytochrome oxidase, subunit 1.
       0.669
Slit_2657
PFAM: cytochrome c class I; KEGG: tbd:Tbd_0129 cytochrome c-type protein.
     
 0.408
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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