Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2686Polyferredoxin-like protein; KEGG: sus:Acid_3512 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein. (403 aa)    
Predicted Functional Partners:
Slit_0414
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.913
Slit_2654
PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: eba:ebA2882 cytochrome oxidase, cytochrome c subunit.
 
  
 0.892
Slit_0412
KEGG: tcx:Tcr_1964 cytochrome c oxidase, cbb3-type, subunit II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO.
 
  
 0.891
Slit_2655
KEGG: sth:STH3153 cytochrome c oxidase heme b and copper-binding subunit; PFAM: cytochrome c oxidase subunit I.
 
  
 0.854
Slit_0411
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; KEGG: rma:Rmag_0039 cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.852
Slit_2659
PFAM: cytochrome c oxidase subunit I; KEGG: ilo:IL1297 Cbb3-type cytochrome oxidase, subunit 1.
 
  
 0.790
Slit_0416
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: vok:COSY_0081 ferredoxin.
  
     0.773
Slit_2644
Spermidine synthase-like protein; KEGG: bbt:BBta_1296 putative spermine/spermidine synthase family protein.
  
     0.658
Slit_2687
ABC transporter related protein; KEGG: cvi:CV_1506 leucine/isoleucine/valine transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.615
Slit_2688
KEGG: ses:SARI_02143 hypothetical protein.
       0.615
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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