Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2688KEGG: ses:SARI_02143 hypothetical protein. (82 aa)    
Predicted Functional Partners:
Slit_2687
ABC transporter related protein; KEGG: cvi:CV_1506 leucine/isoleucine/valine transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.773
Slit_2689
ABC transporter related protein; KEGG: mms:mma_2546 ABC-type branched-chain amino acid transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.773
Slit_2690
PFAM: inner-membrane translocator; KEGG: app:CAP2UW1_3610 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.773
Slit_2691
PFAM: inner-membrane translocator; KEGG: app:CAP2UW1_3611 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.773
Slit_2692
PFAM: Extracellular ligand-binding receptor; KEGG: app:CAP2UW1_3612 extracellular ligand-binding receptor.
       0.675
Slit_2686
Polyferredoxin-like protein; KEGG: sus:Acid_3512 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
       0.615
Slit_2693
PFAM: cytochrome c class I; KEGG: mmb:Mmol_0398 cytochrome c class I.
       0.438
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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