Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2699PFAM: Type II secretion system F domain; KEGG: mei:Msip34_0586 type II secretion system protein. (405 aa)    
Predicted Functional Partners:
Slit_2700
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.932
Slit_0536
KEGG: net:Neut_2128 putative GAF sensor protein; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; GAF domain protein; SMART: GAF domain protein; AAA ATPase.
 
 
 0.879
Slit_2608
KEGG: har:HEAR1953 general secretion pathway protein E (type II traffic warden ATPase); PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
   0.874
Slit_0498
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
   0.873
Slit_1830
PFAM: type II secretion system protein E; KEGG: tbd:Tbd_1295 type II secretion system protein.
 
   0.872
Slit_2073
KEGG: dar:Daro_1151 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
 
   0.870
Slit_0685
KEGG: app:CAP2UW1_0626 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
 
   0.869
Slit_2759
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: dar:Daro_3883 pilus retraction protein PilT; SMART: AAA ATPase.
 
  
 0.789
Slit_0108
TIGRFAM: type IV pilus assembly protein PilM; KEGG: dar:Daro_0210 type IV pilus assembly protein PilM.
 
 
 
 0.784
Slit_1441
Twitching motility protein; KEGG: dar:Daro_1725 pilus retraction protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E.
  
   
 0.776
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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