STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2772PFAM: protein of unknown function DUF1109; KEGG: rpt:Rpal_1069 protein of unknown function DUF1109. (211 aa)    
Predicted Functional Partners:
Slit_2771
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: eli:ELI_10350 hypothetical protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
     
 0.780
Slit_2770
KEGG: mag:amb4390 hypothetical protein.
       0.554
Slit_2773
KEGG: tbd:Tbd_2617 hypothetical protein.
       0.475
Slit_2774
HNH endonuclease; KEGG: swp:swp_3341 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease.
       0.419
Slit_2765
PFAM: Protein of unknown function DUF2282, transmembrane; KEGG: cps:CPS_0845 hypothetical protein.
     
 0.407
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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