STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2787PFAM: transposase IS3/IS911 family protein; KEGG: xcv:XCV0619 transposase. (108 aa)    
Predicted Functional Partners:
Slit_2788
PFAM: Integrase catalytic region; KEGG: net:Neut_2192 integrase catalytic subunit.
 
  
 0.949
Slit_2338
PFAM: Integrase catalytic region; KEGG: net:Neut_2192 integrase catalytic subunit.
 
  
 0.786
Slit_2789
KEGG: bcj:BCAM0627 hypothetical protein; TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891.
       0.423
Slit_2790
TIGRFAM: addiction module antidote protein; KEGG: bcj:BCAM0626 putative DNA-binding protein.
       0.423
Slit_2786
SMART: beta-lactamase domain protein; KEGG: cyn:Cyan7425_1573 beta-lactamase domain protein.
  
  
 0.404
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.