STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2789KEGG: bcj:BCAM0627 hypothetical protein; TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891. (107 aa)    
Predicted Functional Partners:
Slit_2790
TIGRFAM: addiction module antidote protein; KEGG: bcj:BCAM0626 putative DNA-binding protein.
 
    0.947
Slit_1767
TIGRFAM: addiction module antidote protein; KEGG: bam:Bamb_5333 putative transcriptional regulator.
 
    0.780
Slit_1615
TIGRFAM: addiction module antidote protein; PFAM: helix-turn-helix domain protein; KEGG: noc:Noc_0569 Cro/CI family transcriptional regulator; SMART: helix-turn-helix domain protein.
 
    0.778
Slit_2791
KEGG: sus:Acid_6423 hypothetical protein.
       0.553
Slit_2787
PFAM: transposase IS3/IS911 family protein; KEGG: xcv:XCV0619 transposase.
       0.423
Slit_2788
PFAM: Integrase catalytic region; KEGG: net:Neut_2192 integrase catalytic subunit.
       0.423
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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