STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2815PFAM: conserved hypothetical protein; KEGG: tmz:Tmz1t_3722 hypothetical protein. (136 aa)    
Predicted Functional Partners:
hemF
Coproporphyrinogen oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
 
  
 0.954
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
 
  
 0.949
Slit_0423
KEGG: dar:Daro_1048 coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; manually curated; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.929
Slit_2816
KEGG: tbd:Tbd_0276 ABC-2 type transporter, NodJ; TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter.
       0.773
Slit_2817
KEGG: mmw:Mmwyl1_2447 hypothetical protein.
       0.773
Slit_2818
ABC transporter related protein; KEGG: mms:mma_3383 ABC-2 type transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.773
Slit_2819
KEGG: net:Neut_1627 esterase/lipase/thioesterase family protein.
 
     0.696
Slit_2814
PFAM: putative RNA methylase; THUMP domain protein; KEGG: nmu:Nmul_A1032 putative RNA methylase; Belongs to the methyltransferase superfamily.
       0.586
Slit_2821
PFAM: VanZ family protein; KEGG: dar:Daro_4156 VanZ like protein.
       0.572
Slit_2820
KEGG: nmu:Nmul_A0978 putative ferredoxin 2fe-2s protein.
       0.546
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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