STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2819KEGG: net:Neut_1627 esterase/lipase/thioesterase family protein. (206 aa)    
Predicted Functional Partners:
Slit_2820
KEGG: nmu:Nmul_A0978 putative ferredoxin 2fe-2s protein.
       0.809
Slit_2821
PFAM: VanZ family protein; KEGG: dar:Daro_4156 VanZ like protein.
       0.793
Slit_2815
PFAM: conserved hypothetical protein; KEGG: tmz:Tmz1t_3722 hypothetical protein.
 
     0.696
Slit_2816
KEGG: tbd:Tbd_0276 ABC-2 type transporter, NodJ; TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter.
  
    0.548
Slit_2822
KEGG: aeh:Mlg_0407 hypothetical protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein.
       0.537
Slit_2818
ABC transporter related protein; KEGG: mms:mma_3383 ABC-2 type transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.528
Slit_2817
KEGG: mmw:Mmwyl1_2447 hypothetical protein.
       0.524
Slit_2814
PFAM: putative RNA methylase; THUMP domain protein; KEGG: nmu:Nmul_A1032 putative RNA methylase; Belongs to the methyltransferase superfamily.
       0.434
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.421
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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