STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2829KEGG: hypothetical protein. (66 aa)    
Predicted Functional Partners:
Slit_2830
PFAM: globin; KEGG: pub:SAR11_1217 globin family protein.
       0.448
Slit_2826
TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold domain protein; PAS fold-3 domain protein; KEGG: nmu:Nmul_A1287 multi-sensor signal transduction histidine kinase; SMART: response regulator receiver; PAC repeat-containing protein; PAS domain containing protein.
       0.406
Slit_2827
KEGG: nmu:Nmul_A1288 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver.
       0.406
Slit_2828
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: nmu:Nmul_A1289 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein.
       0.406
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.