Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2875PFAM: O-antigen polymerase; KEGG: rso:RSc2204 hypothetical protein. (425 aa)    
Predicted Functional Partners:
Slit_2100
Manually curated; TIGRFAM: lipopolysaccharide heptosyltransferase II; KEGG: cvi:CV_2092 ADP-heptose--LPS heptosyltransferase II; PFAM: glycosyl transferase family 9.
  
 
 0.917
Slit_2906
Three-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.915
Slit_2874
PFAM: glycosyl transferase family 2; KEGG: rso:RSc2203 hypothetical protein.
 
  
 0.870
Slit_2876
PFAM: glycosyl transferase group 1; KEGG: pwa:Pecwa_4376 glycosyl transferase group 1.
  
  
 0.819
Slit_2878
PFAM: glycosyl transferase family 2; KEGG: rso:RSc2201 putative signal peptide protein.
 
  
 0.750
Slit_2903
TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: tgr:Tgr7_2079 mannose-1-phosphate guanylyltransferase (GDP); PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase.
  
  
 0.616
Slit_1369
PFAM: protein of unknown function DUF6 transmembrane; KEGG: bcm:Bcenmc03_1882 hypothetical protein.
  
     0.560
Slit_2877
PFAM: Methyltransferase type 11; KEGG: gme:Gmet_2177 methylase involved in ubiquinone/menaquinone biosynthesis-like.
       0.560
Slit_2892
PFAM: polysaccharide biosynthesis protein; KEGG: dol:Dole_1966 polysaccharide biosynthesis protein.
  
  
 0.457
Slit_2880
PFAM: polysaccharide biosynthesis protein CapD; KEGG: tbd:Tbd_1871 putative epimerase/dehydratase polysaccharide-related biosynthesis protein.
  
  
 0.418
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.