STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2876PFAM: glycosyl transferase group 1; KEGG: pwa:Pecwa_4376 glycosyl transferase group 1. (350 aa)    
Predicted Functional Partners:
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.861
Slit_2875
PFAM: O-antigen polymerase; KEGG: rso:RSc2204 hypothetical protein.
  
  
 0.819
Slit_2874
PFAM: glycosyl transferase family 2; KEGG: rso:RSc2203 hypothetical protein.
  
  
 0.786
Slit_2877
PFAM: Methyltransferase type 11; KEGG: gme:Gmet_2177 methylase involved in ubiquinone/menaquinone biosynthesis-like.
 
   
 0.629
Slit_2878
PFAM: glycosyl transferase family 2; KEGG: rso:RSc2201 putative signal peptide protein.
  
  
 0.598
Slit_0239
PFAM: tail tape measure protein TP901 core region; KEGG: bbr:BB3617 hypothetical protein.
  
     0.575
Slit_2892
PFAM: polysaccharide biosynthesis protein; KEGG: dol:Dole_1966 polysaccharide biosynthesis protein.
  
  
 0.551
Slit_2909
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.548
Slit_2903
TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: tgr:Tgr7_2079 mannose-1-phosphate guanylyltransferase (GDP); PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase.
  
  
 0.540
Slit_2907
KEGG: ppw:PputW619_1397 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.514
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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