STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2877PFAM: Methyltransferase type 11; KEGG: gme:Gmet_2177 methylase involved in ubiquinone/menaquinone biosynthesis-like. (328 aa)    
Predicted Functional Partners:
Slit_2878
PFAM: glycosyl transferase family 2; KEGG: rso:RSc2201 putative signal peptide protein.
       0.757
Slit_2876
PFAM: glycosyl transferase group 1; KEGG: pwa:Pecwa_4376 glycosyl transferase group 1.
 
   
 0.628
Slit_2874
PFAM: glycosyl transferase family 2; KEGG: rso:RSc2203 hypothetical protein.
  
    0.562
Slit_2875
PFAM: O-antigen polymerase; KEGG: rso:RSc2204 hypothetical protein.
  
    0.558
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.