Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Slit_2878PFAM: glycosyl transferase family 2; KEGG: rso:RSc2201 putative signal peptide protein. (279 aa)    
Predicted Functional Partners:
Slit_2877
PFAM: Methyltransferase type 11; KEGG: gme:Gmet_2177 methylase involved in ubiquinone/menaquinone biosynthesis-like.
       0.757
Slit_2875
PFAM: O-antigen polymerase; KEGG: rso:RSc2204 hypothetical protein.
 
  
 0.750
Slit_2876
PFAM: glycosyl transferase group 1; KEGG: pwa:Pecwa_4376 glycosyl transferase group 1.
  
  
 0.598
Slit_2874
PFAM: glycosyl transferase family 2; KEGG: rso:RSc2203 hypothetical protein.
 
   
0.572
Slit_1469
TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; Ig family protein; KEGG: chu:CHU_1335 endoglucanase-like protein; SMART: Autotransporter beta- domain protein.
  
     0.503
Slit_1369
PFAM: protein of unknown function DUF6 transmembrane; KEGG: bcm:Bcenmc03_1882 hypothetical protein.
 
  
 0.472
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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