Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2881PFAM: Glycosyl transferase, family 4, conserved region; KEGG: nmu:Nmul_A0632 glycosyl transferase family protein. (327 aa)    
Predicted Functional Partners:
Slit_2880
PFAM: polysaccharide biosynthesis protein CapD; KEGG: tbd:Tbd_1871 putative epimerase/dehydratase polysaccharide-related biosynthesis protein.
   
 0.958
Slit_2882
PFAM: NAD-dependent epimerase/dehydratase; KEGG: mmb:Mmol_1037 NAD-dependent epimerase/dehydratase.
 
  
 0.857
Slit_2884
KEGG: pmc:P9515_12781 hypothetical protein.
 
    0.809
ftsW
Cell division protein FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily.
  
  
 0.805
Slit_2883
PFAM: acyltransferase 3; KEGG: dol:Dole_1300 acyltransferase 3.
  
  
 0.795
Slit_0970
PFAM: UDP-N-acetylglucosamine 2-epimerase; manually curated; KEGG: pmr:PMI3318 UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
 0.793
murF
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
 
 
 0.791
Slit_2888
PFAM: NAD-dependent epimerase/dehydratase; KEGG: sat:SYN_02661 NAD-dependent epimerase/dehydratase family protein.
 
  
 0.780
Slit_2879
PFAM: glycosyl transferase family 2; KEGG: rme:Rmet_0756 glycosyl transferase family protein.
  
  
 0.776
Slit_2885
PFAM: glycosyl transferase family 2; KEGG: mei:Msip34_0125 glycosyl transferase family 2.
  
  
 0.747
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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