Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2889PFAM: glycosyl transferase family 11; KEGG: tel:tlr2316 putative fucosyl transferase. (292 aa)    
Predicted Functional Partners:
Slit_2890
KEGG: tel:tlr2315 putative fucosyl transferase.
     0.870
Slit_2887
PFAM: glycosyl transferase family 2; KEGG: tel:tll0993 putative glycosly transferase.
      0.805
Slit_2888
PFAM: NAD-dependent epimerase/dehydratase; KEGG: sat:SYN_02661 NAD-dependent epimerase/dehydratase family protein.
 
     0.799
Slit_2885
PFAM: glycosyl transferase family 2; KEGG: mei:Msip34_0125 glycosyl transferase family 2.
       0.778
Slit_2886
PFAM: glycosyl transferase family 2; KEGG: cef:CE0379 hypothetical protein.
       0.773
fcl
NAD-dependent epimerase/dehydratase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
 
     0.773
Slit_2884
KEGG: pmc:P9515_12781 hypothetical protein.
 
     0.772
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
   
 0.762
Slit_2883
PFAM: acyltransferase 3; KEGG: dol:Dole_1300 acyltransferase 3.
       0.737
Slit_2880
PFAM: polysaccharide biosynthesis protein CapD; KEGG: tbd:Tbd_1871 putative epimerase/dehydratase polysaccharide-related biosynthesis protein.
       0.734
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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