Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Slit_2957KEGG: app:CAP2UW1_1005 addiction module toxin, RelE/StbE family; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system. (94 aa)    
Predicted Functional Partners:
Slit_2958
Transcriptional regulator, CopG family; PFAM: CopG domain protein DNA-binding domain protein; KEGG: app:CAP2UW1_1004 hypothetical protein.
  
 
 0.954
Slit_2956
KEGG: aav:Aave_0106 carbonic anhydrase family 3.
       0.773
Slit_2955
PFAM: Protein of unknown function DUF2288; KEGG: cja:CJA_2968 hypothetical protein.
       0.741
Slit_2954
KEGG: hypothetical protein.
       0.658
Slit_2970
KEGG: dar:Daro_0824 hypothetical protein.
  
   0.544
Slit_2971
PFAM: plasmid stabilization system; KEGG: ara:Arad_1350 plasmid stabilization system.
 
     0.515
Slit_2959
Conserved hypothetical protein; Manually curated; KEGG: ppw:PputW619_2830 hypothetical protein.
       0.480
pyrC
Dihydroorotase, homodimeric type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
       0.418
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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