STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2971PFAM: plasmid stabilization system; KEGG: ara:Arad_1350 plasmid stabilization system. (99 aa)    
Predicted Functional Partners:
Slit_2970
KEGG: dar:Daro_0824 hypothetical protein.
  
   0.885
Slit_2958
Transcriptional regulator, CopG family; PFAM: CopG domain protein DNA-binding domain protein; KEGG: app:CAP2UW1_1004 hypothetical protein.
  
 
 0.818
Slit_2972
KEGG: gsu:GSU3438 hypothetical protein; TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein.
  
    0.719
Slit_2973
KEGG: dar:Daro_3448 hypothetical protein.
       0.545
Slit_2974
PFAM: pseudouridine synthase; KEGG: app:CAP2UW1_2371 pseudouridine synthase.
       0.545
Slit_2957
KEGG: app:CAP2UW1_1005 addiction module toxin, RelE/StbE family; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system.
 
     0.515
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
       0.499
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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