Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2973KEGG: dar:Daro_3448 hypothetical protein. (64 aa)    
Predicted Functional Partners:
Slit_2974
PFAM: pseudouridine synthase; KEGG: app:CAP2UW1_2371 pseudouridine synthase.
       0.773
Slit_2972
KEGG: gsu:GSU3438 hypothetical protein; TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein.
       0.584
Slit_2970
KEGG: dar:Daro_0824 hypothetical protein.
       0.545
Slit_2971
PFAM: plasmid stabilization system; KEGG: ara:Arad_1350 plasmid stabilization system.
       0.545
Slit_2975
PFAM: import inner membrane translocase subunit Tim44; KEGG: mmb:Mmol_2092 import inner membrane translocase subunit Tim44.
       0.519
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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