Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2989TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: app:CAP2UW1_4360 ParB-like partition protein; SMART: ParB domain protein nuclease; Belongs to the ParB family. (288 aa)    
Predicted Functional Partners:
Slit_2990
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: nmu:Nmul_A2768 cobyrinic acid a,c-diamide synthase.
 
 0.991
Slit_2977
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mms:mma_0064 chromosome partitioning protein ParA.
 
 0.949
Slit_1430
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mms:mma_0064 chromosome partitioning protein ParA.
 
 0.931
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.928
Slit_2580
KEGG: nmu:Nmul_A0176 cell division FtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: DNA translocase ftsK gamma; AAA ATPase.
  
   
 0.819
mnmG
Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
  
  
 0.800
atpB-2
ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
       0.793
Slit_2988
ATP synthase I chain; KEGG: tbd:Tbd_2804 hypothetical protein; manually curated; PFAM: ATP synthase I chain.
       0.788
mnmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
    0.740
Slit_2695
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: tbd:Tbd_2729 partition-related protein.
  
 
 0.701
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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